In this assignment, you will write code to calculate distances between atoms in a molecular structure and produce a connectivity matrix M.
The matrix M is square, with dimensions NxN (rows, columns), where N is the number of atoms in the molecule. Each cell of the matrix represents the connectivity between two atoms, i and j, which can either be 1 (connected) or 0 (not connected).
Your code should take as an input a URL to a molecular structure in PDB format.
In terms of organization, write your code in three separate modules:
js/parser.jsshould have a function to read the molecular data.js/distance.jsshould have code to calculate distances between atoms.js/connectivity.jsshould define the matrix M from the coordinates.