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algs_papers.rst
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algs_papers.rst
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===========================================================================================
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration
===========================================================================================
http://www.scopus.com/record/display.url?eid=2-s2.0-64949166881&origin=resultslist&sort=cp-f&src=s&st1=registration+AND+MRI+AND+brain&nlo=&nlr=&nls=&sid=Tquw_UpqUiSbgW72j9yl680%3a810&sot=b&sdt=b&sl=163&s=TITLE%28registration+AND+MRI+AND+brain%29+AND+SUBJAREA%28MULT+OR+AGRI+OR+BIOC+OR+IMMU+OR+NEUR+OR+PHAR+OR+MULT+OR+MEDI+OR+NURS+OR+VETE+OR+DENT+OR+HEAL%29+AND+PUBYEAR+%3E+1999&relpos=0&relpos=0&searchTerm=TITLE(registration%20AND%20MRI%20AND%20brain)%20AND%20SUBJAREA(MULT%20OR%20AGRI%20OR%20BIOC%20OR%20IMMU%20OR%20NEUR%20OR%20PHAR%20OR%20MULT%20OR%20MEDI%20OR%20NURS%20OR%20VETE%20OR%20DENT%20OR%20HEAL)%20AND%20PUBYEAR%20%3E%201999
The winners
-----------
- ART: Automatic Registration Toolbox. http://www.nitrc.org/projects/art/
- IRTK: Image Registration Toolkit. http://www.doc.ic.ac.uk/~dr/software/
- SyN: Symmetric Normalization. SyN is available in the ANTS toolkit; a new release with tutorial is available at http://www.picsl.upenn.edu/ANTS/
- FNIRT: FMRIB's Nonlinear Image Registration Tool. (Maybe same page as FLIRT)
- SPM5 DARTEL Toolbox: Diffeomorphic Anatomical Registration using Exponentiated Lie algebra. Unified Segmentation, and the DARTEL Toolbox are part of the SPM5 package and may be downloaded from http://www.fil.ion.ucl.ac.uk/spm/software/spm5/
- JRD-fluid: Jensen-Rényi Divergence fluid. No page.
Non-winners
-----------
- Demons: Diffeomorphic Demons. It is implemented as part of the finite difference solver framework within the Insight Toolkit (ITK) and can be downloaded at http://hdl.handle.net/1926/510
- FLIRT: FMRIB's Linear Image Registration Tool (ONLY LINEAR ONE). http://www.fmrib.ox.ac.uk/fsl/
- AIR: Automated Image Registration. http://air.bmap.ucla.edu
- ROMEO: Robust multigrid elastic registration based on optical flow. No page.
- ANIMAL: Automatic Nonlinear Image Matching and Anatomical Labeling. http://www.bic.mni.mcgill.ca/users/louis/MNI_ANIMAL_home/readme/
More papers from Further Reading and References
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- Same people, 2010, evaluates ANT which is one of the winners. http://www.mindboggle.info/papers/ANTSevaluation_NeuroImage2010.pdf
- Same people, 2010, evaluates SyN and ART for volume registration. http://www.mindboggle.info/papers/evaluation_NeuroImage2010/Evaluation_Klein_NeuroImage2010.pdf
- A quantitative evaluation of cross-participant registration techniques for MRI studies of the medial temporal lobe. http://www.scopus.com/record/display.url?eid=2-s2.0-56349088359&origin=reflist&sort=cp-f&src=s&st1=evaluation+of+registration+techniques&nlo=&nlr=&nls=&sid=3VLs4SkM_qnP2IHdugVg8cK%3a510&sot=b&sdt=b&sl=159&s=TITLE-ABS-KEY%28evaluation+of+registration+techniques%29+AND+SUBJAREA%28MULT+OR+AGRI+OR+BIOC+OR+IMMU+OR+NEUR+OR+PHAR+OR+MULT+OR+MEDI+OR+NURS+OR+VETE+OR+DENT+OR+HEAL%29
- [FR] Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans. http://www.scopus.com/record/display.url?eid=2-s2.0-12344256755&origin=resultslist&sort=plf-f&src=s&st1=quantitative+comparison+of+algorithms+for+inter-subject+regustration+of+3D+volumetric+brain+MRI+scans&sid=3VLs4SkM_qnP2IHdugVg8cK%3a680&sot=b&sdt=b&sl=124&s=TITLE-ABS-KEY-AUTH+%28+quantitative+comparison+of+algorithms+for+inter-subject+registration+of+3D+volumetric+brain+MRI+scans+%29&relpos=0&relpos=0&searchTerm=TITLE-ABS-KEY-AUTH%20(%20quantitative%20comparison%20of%20algorithms%20for%20inter-subject%20registration%20of%203D%20volumetric%20brain%20MRI%20scans%20)
- [FR] A fully automatic multimodality image registration algorithm. http://www.scopus.com/record/display.url?eid=2-s2.0-0029166677&origin=resultslist&sort=plf-f&src=s&st1=Ardekani%2cB.+A.&sid=RDQ3sFYuweVc_eS5KloRjVY%3a30&sot=b&sdt=b&sl=25&s=FIRSTAUTH%28Ardekani%2cB.+A.%29&relpos=15&relpos=15&searchTerm=FIRSTAUTH(Ardekani,B.%20A.)
- [Further reading] Non-parametric diffeomorphic image registration with the demons algorithm. http://www.scopus.com/record/display.url?eid=2-s2.0-38349071906&origin=resultslist&sort=plf-f&src=s&st1=vercauteren&nlo=&nlr=&nls=&sid=Tw16MwgRSnE5SBg0C_PV9wJ%3a460&sot=q&sdt=cl&cluster=scopubyr%2c%222007%22%2ct&sl=31&s=TITLE-ABS-KEY-AUTH%28vercauteren%29&relpos=10&relpos=10&searchTerm=TITLE-ABS-KEY-AUTH(vercauteren)%20AND%20(%20LIMIT-TO(PUBYEAR,2007)%20)
- Insight into efficient image registration techniques and the demons algorithm. http://www.scopus.com/record/display.url?eid=2-s2.0-38149058967&origin=resultslist&sort=plf-f&src=s&st1=vercauteren&nlo=&nlr=&nls=&sid=Tw16MwgRSnE5SBg0C_PV9wJ%3a460&sot=q&sdt=cl&cluster=scopubyr%2c%222007%22%2ct&sl=31&s=TITLE-ABS-KEY-AUTH%28vercauteren%29&relpos=8&relpos=8&searchTerm=TITLE-ABS-KEY-AUTH(vercauteren)%20AND%20(%20LIMIT-TO(PUBYEAR,2007)%20)
- [Further reading] A fast diffeomorphic image registration algorithm. DARTEL. http://www.scopus.com/record/display.url?eid=2-s2.0-34548832230&origin=resultslist&sort=plf-f&src=s&nlo=&nlr=&nls=&imp=t&sid=Tw16MwgRSnE5SBg0C_PV9wJ%3a210&sot=br&sdt=sisr&sl=56&s=SOURCE-ID%2817495%29+AND+PUBYEAR+IS+2007+AND+NOT+DOCTYPE%28ip%29&ref=%28registration%29&relpos=9&relpos=9&searchTerm=(SOURCE-ID(17495)%20AND%20PUBYEAR%20IS%202007%20AND%20NOT%20DOCTYPE(ip))%20AND%20(registration)
- [FR] Consistent image registration. http://www.scopus.com/record/display.url?eid=2-s2.0-0035384866&origin=reflist&sort=plf-f&src=s&st1=consistent+image+registration&nlo=&nlr=&nls=&sid=Tw16MwgRSnE5SBg0C_PV9wJ%3a300&sot=q&sdt=cl&cluster=scopubyr%2c%222001%22%2ct&sl=49&s=TITLE-ABS-KEY-AUTH%28consistent+image+registration%29
- Consistent nonlinear elastic image registration. http://www.scopus.com/record/display.url?eid=2-s2.0-0035698067&origin=resultslist&sort=plf-f&src=s&st1=consistent+image+registration&nlo=&nlr=&nls=&sid=Tw16MwgRSnE5SBg0C_PV9wJ%3a300&sot=q&sdt=cl&cluster=scopubyr%2c%222001%22%2ct&sl=49&s=TITLE-ABS-KEY-AUTH%28consistent+image+registration%29&relpos=1&relpos=1&searchTerm=TITLE-ABS-KEY-AUTH(consistent%20image%20registration)%20AND%20(%20LIMIT-TO(PUBYEAR,2001)%20)
- Diffeomorphic registration using B-splines. http://www.scopus.com/record/display.url?eid=2-s2.0-33750228687&sort=plf-f&src=s&st1=diffeomorphic+registration+using+B-splines&nlo=&nlr=&nls=&sid=yesjaKWSChPAwvloMDMznv3%3a230&sot=q&sdt=cl&cluster=scopubyr%2c%222006%22%2ct&sl=62&s=TITLE-ABS-KEY-AUTH%28diffeomorphic+registration+using+B-splines%29&origin=resultslist&relpos=0&txGid=yesjaKWSChPAwvloMDMznv3%3a25
Extras
~~~~~~
- Automatic identification of landmarks for standard slice positioning in brain MRI. http://www.scopus.com/record/display.url?eid=2-s2.0-80051933202&origin=resultslist&sort=plf-f&cite=2-s2.0-64949166881&src=s&nlo=&nlr=&nls=&imp=t&sid=X8J7wLuXHTAI7rciS4p6xAV%3a130&sot=cite&sdt=a&sl=0&relpos=36&relpos=16&searchTerm=
- Some of the same people. Model-based automatic detection of the anterior and posterior commissures on MRI scans. http://www.scopus.com/record/display.url?eid=2-s2.0-64949147879&origin=resultslist&sort=plf-f&src=s&st1=Ardekani%2cB.+A.&sid=RDQ3sFYuweVc_eS5KloRjVY%3a30&sot=b&sdt=b&sl=25&s=FIRSTAUTH%28Ardekani%2cB.+A.%29&relpos=1&relpos=1&searchTerm=FIRSTAUTH(Ardekani,B.%20A.)
- Evaluation of five non-rigid image registration algorithms using the NIREP framework. http://www.scopus.com/record/display.url?eid=2-s2.0-79751489057&origin=resultslist&sort=plf-f&cite=2-s2.0-64949166881&src=s&nlo=&nlr=&nls=&imp=t&sid=X8J7wLuXHTAI7rciS4p6xAV%3a130&sot=cite&sdt=a&sl=0&relpos=88&relpos=8&searchTerm=
- Elastix: A toolbox for intensity-based medical image registration. http://www.scopus.com/record/display.url?eid=2-s2.0-73849116467&origin=resultslist&sort=plf-f&cite=2-s2.0-64949166881&src=s&nlo=&nlr=&nls=&imp=t&sid=X8J7wLuXHTAI7rciS4p6xAV%3a130&sot=cite&sdt=a&sl=0&relpos=144&relpos=4&searchTerm=
---------------------------------------------------------------
========================================
Other papers with goals closer to ours
========================================
- [2002] Quantification of small cerebral ventricular volume changes in treated growth hormone patients using nonrigid registration http://www.scopus.com/record/display.url?eid=2-s2.0-0036826359&origin=resultslist&sort=plf-f&src=s&st1=Holden&sid=Tquw_UpqUiSbgW72j9yl680%3a90&sot=b&sdt=b&sl=143&s=FIRSTAUTH%28Holden%29+AND+SUBJAREA%28MULT+OR+AGRI+OR+BIOC+OR+IMMU+OR+NEUR+OR+PHAR+OR+MULT+OR+MEDI+OR+NURS+OR+VETE+OR+DENT+OR+HEAL%29+AND+PUBYEAR+%3d+2002&relpos=10&relpos=10&searchTerm=FIRSTAUTH(Holden)%20AND%20SUBJAREA(MULT%20OR%20AGRI%20OR%20BIOC%20OR%20IMMU%20OR%20NEUR%20OR%20PHAR%20OR%20MULT%20OR%20MEDI%20OR%20NURS%20OR%20VETE%20OR%20DENT%20OR%20HEAL)%20AND%20PUBYEAR%20=%202002
- [2002] Automatic detection and segmentation of evolving processes in 3D medical images: Application to multiple sclerosis http://www.scopus.com/record/display.url?eid=2-s2.0-0036624489&origin=resultslist&sort=plf-f&src=s&st1=Rey&nlo=&nlr=&nls=&sid=Tquw_UpqUiSbgW72j9yl680%3a240&sot=b&sdt=b&sl=140&s=FIRSTAUTH%28Rey%29+AND+SUBJAREA%28MULT+OR+AGRI+OR+BIOC+OR+IMMU+OR+NEUR+OR+PHAR+OR+MULT+OR+MEDI+OR+NURS+OR+VETE+OR+DENT+OR+HEAL%29+AND+PUBYEAR+%3d+2002&relpos=38&relpos=18&searchTerm=FIRSTAUTH(Rey)%20AND%20SUBJAREA(MULT%20OR%20AGRI%20OR%20BIOC%20OR%20IMMU%20OR%20NEUR%20OR%20PHAR%20OR%20MULT%20OR%20MEDI%20OR%20NURS%20OR%20VETE%20OR%20DENT%20OR%20HEAL)%20AND%20PUBYEAR%20=%202002
- [2005 | Many citations, very general] Image change detection algorithms: A systematic survey http://www.scopus.com/record/display.url?eid=2-s2.0-14844339425&origin=resultslist&sort=cp-f&cite=2-s2.0-0036624489&src=s&nlo=&nlr=&nls=&imp=t&sid=Tquw_UpqUiSbgW72j9yl680%3a620&sot=cite&sdt=a&sl=0&relpos=0&relpos=0&searchTerm=
- [2004] Automatic registration of brain magnetic resonance images based on talairach reference system http://www.scopus.com/record/display.url?eid=2-s2.0-4744366783&origin=reflist&sort=r-f&src=s&st1=registration+AND+MRI+AND+brain&nlo=&nlr=&nls=&sid=Tquw_UpqUiSbgW72j9yl680%3a740&sot=b&sdt=b&sl=171&s=TITLE-ABS-KEY%28registration+AND+MRI+AND+brain%29+AND+SUBJAREA%28MULT+OR+AGRI+OR+BIOC+OR+IMMU+OR+NEUR+OR+PHAR+OR+MULT+OR+MEDI+OR+NURS+OR+VETE+OR+DENT+OR+HEAL%29+AND+PUBYEAR+%3E+1999
- [2004] A review of the automated detection of change in serial imaging studies of the brain http://www.scopus.com/record/display.url?eid=2-s2.0-15044355781&origin=resultslist&sort=cp-f&cite=2-s2.0-0036624489&src=s&nlo=&nlr=&nls=&imp=t&sid=Tquw_UpqUiSbgW72j9yl680%3a620&sot=cite&sdt=a&sl=0&relpos=23&relpos=3&searchTerm=
- [2009 | Looks great, but it's in turkish] Automatic registration of follow-up brain MRI scans http://www.scopus.com/record/display.url?eid=2-s2.0-70350225515&origin=resultslist&sort=r-f&src=s&st1=registration+AND+MRI+AND+brain&nlo=&nlr=&nls=&sid=Tquw_UpqUiSbgW72j9yl680%3a740&sot=b&sdt=b&sl=171&s=TITLE-ABS-KEY%28registration+AND+MRI+AND+brain%29+AND+SUBJAREA%28MULT+OR+AGRI+OR+BIOC+OR+IMMU+OR+NEUR+OR+PHAR+OR+MULT+OR+MEDI+OR+NURS+OR+VETE+OR+DENT+OR+HEAL%29+AND+PUBYEAR+%3E+1999&relpos=3&relpos=3&searchTerm=TITLE-ABS-KEY(registration%20AND%20MRI%20AND%20brain)%20AND%20SUBJAREA(MULT%20OR%20AGRI%20OR%20BIOC%20OR%20IMMU%20OR%20NEUR%20OR%20PHAR%20OR%20MULT%20OR%20MEDI%20OR%20NURS%20OR%20VETE%20OR%20DENT%20OR%20HEAL)%20AND%20PUBYEAR%20%3E%201999#
Questions
=========
* Segmentation propagation?