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Destination.php
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Destination.php
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<?php
namespace Stanford\MirrorSourceDataModule;
use REDCap;
/**
* Class Destination
* @package Stanford\MirrorSourceDataModule
* @property int $projectId
* @property \Project $project
* @property int $eventId
* @property array $dags
* @property array $record
* @property string $recordId
* @property string $instrument
* @property string $eventName
* @property string $primaryKey
* @property boolean $fieldClobber
* @property boolean $changeRecordId
* @property boolean $generateSurvey
* @property boolean $incrementRecordId
* @property array $config
* @property string $PREFIX
* @property string $dagRecordId
* @property string $survey
*/
class Destination
{
use emLoggerTrait;
private $projectId;
private $project;
private $eventId;
private $dags;
private $record;
private $recordId;
private $instrument;
private $eventName;
private $primaryKey;
private $fieldClobber;
private $changeRecordId = true;
private $config;
public $PREFIX;
private $dagRecordId;
private $generateSurvey;
private $survey;
private $incrementRecordId = false;
/**
* Source constructor.
* @param $projectId
* @param null $eventId
* @param null $recordId
* @param null $instrument
* @param null $dags
*/
public function __construct($projectId, $PREFIX, $incrementRecordId)
{
$this->setProjectId($projectId);
/**
* this public so we do not have to modify emLoggerTrait
*/
$this->PREFIX = $PREFIX;
$this->setProject(new \Project($this->getProjectId()));
$this->setPrimaryKey($this->getProject()->table_pk);
$this->setIncrementRecordId($incrementRecordId);
}
/**
* @param $config
* @param \Stanford\MirrorSourceDataModule\Source $source
* @param $destinationSaveRecordHook
* @param null $dagId
* @return bool
*/
public function saveData($config, $source, $destinationSaveRecordHook, $firstEvetnId, $dagId = null)
{
//$this->emDebug("PROCEED: Target $destinationId does not exists (" . count($target_results) . ") in $destination_pid or clobber true ($destination_field_clobber).");
//5. SET UP DESTINATION PROJECT TO SAVE DATA
//GET logging variables from target project
//add additional fields to be added to the SaveData call
//set the new ID
$record = $this->getRecord();
$record[$this->getPrimaryKey()] = $this->getRecordId();
//if destination event id defined add it to destination record
if (!empty($this->getEventName())) {
$record['redcap_event_name'] = ($this->getEventName());
}
//enter logging field for destination-field-for-source-id
if (!empty($config['destination-field-for-source-id'])) {
$record[$config['destination-field-for-source-id']] = $source->getRecordId();
}
//enter logging field for destination-field-for-migration-timestamp
if (!empty($config['destination-field-for-migration-timestamp'])) {
$record[$config['destination-field-for-migration-timestamp']] = date('Y-m-d H:i:s');
}
//if redcap_repeat_instrument and redcap_repeat_instance are blank then strip them.
if ((isset($record['redcap_repeat_instrument'])) && ($record['redcap_repeat_instrument'] == '')) {
unset($record['redcap_repeat_instrument']);
if ((isset($record['redcap_repeat_instance'])) && ($record['redcap_repeat_instance'] == '')) {
unset($record['redcap_repeat_instance']);
}
}
$this->setRecord($record);
//$this->emLog($newData, "SAVING THIS TO DESTINATION DATA");
//6. UPDATE DESTINATION: Upload the data to destination project
// $result = REDCap::saveData(
// $destination_pid,
// 'json',
// json_encode(array($newData)),
// (($destination_field_clobber == '1') ? 'overwrite' : 'normal'));
// IN ORDER TO BE ABLE TO COPY CAT INSTRUMENTS WE ARE GOING TO USE THE UNDERLYING RECORDS SAVE METHOD INSTEAD OF REDCAP METHOD:
/*$args = array(
0 => $this->getDestinationProjectId(),
1 => 'json',
2 => json_encode(array($sourceData)),
3 => ($config['destination-field-clobber'] == '1') ? 'overwrite' : 'normal',
4 => 'YMD',
5 => 'flat',
6 => null,
7 => true,
8 => true,
9 => true,
10 => false,
11 => true,
12 => array(),
13 => false,
14 => false, // CONTINUE WITH UPLOADED FILES
15 => false,
16 => false,
17 => true
);*/
//save destination record (This can be moved to destination object (whoever review this what do you think))
$result = \REDCap::saveData($this->getProjectId(),
'json',
json_encode(array($this->getRecord())),
($this->isFieldClobber() == '1') ? 'overwrite' : 'normal',
'YMD',
'flat');
//$result = call_user_func_array(array("Records", "saveData"), $args);
// $this->emDebug("SAVE RESULT", $result);
$this->emDebug("SAVE RESULT");
// Check for upload errors
if (!empty($result['errors'])) {
return $result['errors']; // this is a string, not an array
} else {
/**
* let check if source record is in a DAG, if so lets find the corresponding Destination DAG and update the data accordingly
*/
if (($config['same-dags-name'] || !empty($config['source-destination-dag-map'])) && !empty($dagId)) {
try {
//get first event in case destination event name is not defined.
if ($this->getEventName() == "" || $this->getEventName() == null) {
$this->setEventId($firstEvetnId);
//at this point no need for event name because everything is saved we just want to save dag information
}
/**
* temp solution till pull request is approved by Venderbilt
*/
$record = $this->getRecordId();
$value = $dagId;
$fieldName = '__GROUPID__';
$destinationPid = $this->getProjectId();
$eventId = $this->getEventId();
$data_table = method_exists('\REDCap', 'getDataTable') ? \REDCap::getDataTable($destinationPid) : "redcap_data";
db_query("INSERT INTO $data_table (project_id, event_id, record, field_name, value) VALUES ($destinationPid, $eventId, '$record', '$fieldName', '$value')");
//get destination event arm to be used to update id for the dropdown
$arm = $this->getArm();
//just update record list. only for Record Status Dashboard dropdown
db_query("UPDATE redcap_record_list SET dag_id = '$value' WHERE project_id = $destinationPid and arm = $arm and record = '$record'");
} catch (\Exception $e) {
$msg = $e->getMessage();
$source->updateNotes($config, $msg);
return false;
}
//
//$this->setDAG(array_pop($result['ids']), $this->getDagId(), $destinationPid, $event_id);
}
// Call save_record hook on destination?
if ($destinationSaveRecordHook[0]) {
//last check if no event name is defined for destination then use event id obtained to get event name
if (!$this->getEventName()) {
$this->setEventName(\REDCap::getEventNames(true, true,
$this->getEventId()));
}
$this->emDebug('About to call saveRecordHook in event ' . $this->getEventId() );
// REDCap Hook injection point: Pass project_id and record name to method
// \Hooks::call('redcap_save_record', array($destinationPid, $destination_id, $_GET['page'], $destination_event_name, $group_id, null, null, $_GET['instance']));
if(!empty($this->getProjectId())) {
$result = \Hooks::call('redcap_save_record',
array(
$this->getProjectId(),
$this->getRecordId(),
filter_var($_GET['page'], FILTER_SANITIZE_STRING),
$this->getEventId(),
null,
null,
null,
null
)
);
// $this->emDebug('MMD Save Record Hook Result',$result);
$this->emDebug('MMD Save Record Hook Result');
} else {
$this->emError('MMD Save Record Hook has no project id, skipping save record call (likely a configuration issue) ');
}
} else {
$this->emDebug('No save record hook');
}
$this->migrateFiles($source);
// check if any survey is defined and save link to source.
$this->processSurvey($config, $source);
return true;
}
}
/**
* @param array $config
* @param \Stanford\MirrorSourceDataModule\Source $source
*/
private function processSurvey($config, $source)
{
if ($this->isGenerateSurvey() && $this->getSurvey()) {
// lets generate survey url for the instrument we defined in the config.json
$link = \REDCap::getSurveyLink($this->getRecordId(), $this->getSurvey(), $this->getEventId(), 1,
$this->getProjectId());
$source->saveSurveyURL($config, $link);
// header('Location: ' . $link);
// exit;
}
}
/**
* @param $pid
* @param int $event_id : Pass NULL or '' if CLASSICAL
* @param string $prefix
* @param bool $padding
* @return bool|int|string
* @throws
*/
public function getNextRecordId($prefix = '', $padding = false)
{
$q = \REDCap::getData($this->getProjectId(), 'array', null, array($this->getPrimaryKey()), $this->getEventId());
//$this->emLog($q, "Found records in project $pid using $id_field");
$i = $this->initiateRecordId($q, $prefix, $padding);
do {
// Make a padded number
if ($padding) {
// make sure we haven't exceeded padding, pad of 2 means
//$max = 10^$padding;
$max = 10 ** $padding;
if ($i >= $max) {
$this->emLog("Error - $i exceeds max of $max permitted by padding of $padding characters");
return false;
}
$id = str_pad($i, $padding, "0", STR_PAD_LEFT);
//$this->emLog("Padded to $padding for $i is $id");
} else {
$id = $i;
}
// Add the prefix
$id = $prefix . $id;
//$this->emLog("Prefixed id for $i is $id for event_id $event_id and idfield $id_field");
$i++;
} while (!empty($q[$id][$this->getEventId()][$this->getPrimaryKey()]));
$this->emLog("Next ID in project " . $this->getProjectId() . " for field " . $this->getPrimaryKey() . " is $id");
return $id;
}
private function initiateRecordId($query, $prefix, $padding)
{
if ($this->isIncrementRecordId()) {
// in case we have prefix we only want to records with that prefix not whole list.
if ($prefix) {
$array = array();
foreach (array_keys($query) as $item) {
if (strncmp($item, $prefix, strlen($prefix)) === 0) {
$array[] = $item;
}
}
if (!empty($array)) {
$id = $array[count($array) - 1];
} else {
$id = 1;
}
} else {
$id = array_keys($query)[count($query) - 1];
}
// first step is to remove prefix
$id = str_replace($prefix, '', $id);
// if padding exist then trim the id.
if ($padding) {
$id = ltrim('0', $id);
}
return $id;
}
return 1;
}
/**
* check if destination record already saved before
* @return bool
*/
public function isRecordIdExist()
{
$results = REDCap::getData($this->getProjectId(), 'json', $this->getRecordId(), null, $this->getEventName());
$results = json_decode($results, true);
$target_results = current($results);
if ((!empty($target_results))) {
return true;
}
return false;
}
/**
* get destination arm for current event
* @return bool|int
*/
public function getArm()
{
$arm = db_result(db_query("select arm_num from redcap_events_arms a, redcap_events_metadata e where a.arm_id = e.arm_id and e.event_id = " . $this->getEventId()),
0);
// Just in case arm is blank somehow
if ($arm == "" || !is_numeric($arm)) {
$arm = 1;
}
return $arm;
}
/**
* @param $config
* @param \Stanford\MirrorSourceDataModule\Source $source
* @param null $dagId
*/
public function prepareDestinationRecord($config, $source, $dagId = null)
{
/**
* let check if source record is in a DAG, if so lets find the corresponding Destination DAG and update the data accordingly
*/
// if (($config['same-dags-name'] || !empty($config['source-destination-dag-map'])) && strpos($source->getRecordId(),'-') !== false && $this->getDestination()->isChangeRecordId()) {
if (($config['same-dags-name'] || !empty($config['source-destination-dag-map'])) && !empty($dagId) && $this->isChangeRecordId()) {
//set destination record id based on dag information saved inside the hook
$this->setRecordId($this->getNextRecordDAGID($this->getProjectId(), $dagId));
//set destination record based on source record
$record = $source->getRecord();
//modify record id in value to use same value we got in the above tow lines them set the destination record
$record[$this->getPrimaryKey()] = $this->getRecordId();
$this->setRecord($record);
} else {
//make sure the record we are saving into destination project is the one we pulled from source. with specified fields.
$this->setRecord($source->getRecord());
}
}
/**
* @param \Stanford\MirrorSourceDataModule\Source $source
*/
private function migrateFiles($source){
$project = $source->getProject();
$sourceFields = $project->metadata;
$record = $this->getRecord();
foreach ($record as $field => $value){
if($sourceFields[$field]['element_type'] == 'file'){
$newDocId = copyFile($value, $this->getProjectId());
$projectId = $this->getProjectId();
$event = $this->getEventId();
$recordId = $this->getRecordId();
$data_table = method_exists('\REDCap', 'getDataTable') ? \REDCap::getDataTable($projectId) : "redcap_data";
//Save file skip uploaded files values for some reason. so you need to save these values manually.
$sql = "insert into $data_table (`value`, project_id, event_id, record, field_name) values ('$newDocId' , '{$projectId}', '{$event}','" . db_escape($recordId) . "','{$field}')";
db_query($sql);
}
}
$this->setRecord($record);
}
/**
* if dag is defined then put this id as fall back before run getDestinationRecordId which might change the reocrdi id based on admin configuration
* @param int $dagId
* @return int
*/
private function getNextRecordDAGID($destinationProjectId, $dagId)
{
$data_table = method_exists('\REDCap', 'getDataTable') ? \REDCap::getDataTable($destinationProjectId) : "redcap_data";
$sql = "SELECT MAX(record) as recordId FROM $data_table WHERE field_name = '__GROUPID__' AND `value` = $dagId AND project_id = '$destinationProjectId'";
$q = db_query($sql);
$row = db_fetch_row($q);
if (!empty($row)) {
$parts = explode("-", $row[0]);
$recordId = end($parts) + 1;
$this->setDagRecordId($dagId . "-" . $recordId);
} else {
$this->setDagRecordId($dagId . "-" . 1);
}
return $this->getDagRecordId();
}
/**
* this function will set destination record id(which might already be set by getNextRecordDAGID) in case configuration is different
* @param $config
* @param \Stanford\MirrorSourceDataModule\Source $source
* @return bool
*/
public function prepareRecordId($config, $source, $dagId = null)
{
$destinationId = null;
// Method for creating the destination id (destination-id-create-new, destination-id-like-source, destination-id-source-specified)
$destinationIdSelect = $config['destination-id-select'];
//get primary key for TARGET project
$destinationPrimaryKey = $this->getPrimaryKey();
//$this->emDebug($source->getRecordId(), $this->getProjectId(), $destinationIdSelect, $destinationPrimaryKey);
$destinationId = '';
switch ($destinationIdSelect) {
case 'destination-id-like-source':
$destinationId = $source->getRecordId();
break;
case 'destination-id-source-specified':
$destination_id_source_specified_field = $config['destination-id-source-specified-field'];
//get data from source for the value in this field
$results = REDCap::getData('json', $source->getRecordId(),
array($destination_id_source_specified_field),
$source->getEventName());
$results = json_decode($results, true);
$existing_target_data = current($results);
$destinationId = $existing_target_data[$destination_id_source_specified_field];
// $this->emDebug($existing_target_data, $destination_id_source_specified_field,
// $this->getRecordId(),
// "SOURCE SPECIFIED DESTINATION ID: " . $this->getRecordId());
$this->emDebug($this->getRecordId(),
"SOURCE SPECIFIED DESTINATION ID: " . $this->getRecordId());
break;
case 'destination-id-create-new':
//if destination record id is was set from previous iteration of sub-setting loop then use that instead so the data is saved to save record
if ($this->isChangeRecordId()) {
$destinationIdPrefix = $config['destination-id-prefix'];
$destinationIDPadding = $config['destination-id-padding'];
/**
* in case we are adding to DAG just keep whatever we already retrieved
*/
if ($this->getDagRecordId() != null) {
$destinationId = $this->getDagRecordId();
// Make a padded number
if ($destinationIDPadding) {
// make sure we haven't exceeded padding, pad of 2 means
//$max = 10^$padding;
$max = 10 ** $destinationIDPadding;
if ($destinationId >= $max) {
$this->emLog("Error - $destinationId exceeds max of $max permitted by padding of $destinationIDPadding characters");
return false;
}
$destinationId = str_pad($destinationId, $destinationIDPadding, "0", STR_PAD_LEFT);
//$this->emLog("Padded to $padding for $i is $id");
}
//does prefix is wrapped with square brackets ? if so build the custom prefix.
preg_match("/\[.*?\]/", $destinationIdPrefix, $matches);
if (!empty($matches)) {
$string = $matches[0];
$string = str_replace(array('[', ']'), '', $string);
$parts = explode(":", $string);
$r = $this->buildCustomPrefix($parts[0], end($parts), $this->getProjectId(), $dagId);
$destinationIdPrefix = str_replace($matches[0], $r, $destinationIdPrefix);
}
$destinationId = $destinationIdPrefix . $destinationId;
} else {
//get next id from destination project
$destinationId = $this->getNextRecordId($destinationIdPrefix, $destinationIDPadding);
}
}
break;
default:
$destinationId = $this->getNextRecordId();
}
$this->setRecordId($destinationId);
}
/**
* build prefix using admin definition currently it has only DAG but its will be easy to add more cases :)
* @param $type
* @param $field
* @param $projectId
* @param $value
* @return bool
*/
private function buildCustomPrefix($type, $field, $projectId, $value)
{
switch (strtolower($type)) {
case 'dag':
switch (strtolower($field)) {
case 'name':
return MirrorSourceDataModule::getProjectDAGName($projectId, $value);
break;
case 'id':
return $value;
break;
}
break;
default:
return $value;
break;
}
}
/**
* @return mixed
*/
public function getDagRecordId()
{
return $this->dagRecordId;
}
/**
* @param mixed $dagRecordId
*/
public function setDagRecordId($dagRecordId)
{
$this->dagRecordId = $dagRecordId;
}
/**
* @return array
*/
public function getConfig()
{
return $this->config;
}
/**
* @param array $config
*/
public function setConfig($config)
{
$this->config = $config;
}
/**
* @return bool
*/
public function isChangeRecordId()
{
return $this->changeRecordId;
}
/**
* @param bool $changeRecordId
*/
public function setChangeRecordId($changeRecordId)
{
$this->changeRecordId = $changeRecordId;
}
/**
* @return int
*/
public function getProjectId()
{
return $this->projectId;
}
/**
* @param int $projectId
*/
public function setProjectId($projectId)
{
$this->projectId = $projectId;
}
/**
* @return \Project
*/
public function getProject()
{
return $this->project;
}
/**
* @param \Project $project
*/
public function setProject($project)
{
$this->project = $project;
}
/**
* @return int
*/
public function getEventId()
{
return $this->eventId;
}
/**
* @param int $eventId
*/
public function setEventId($eventId)
{
$this->eventId = $eventId;
}
/**
* @return array
*/
public function getDags()
{
return $this->dags;
}
/**
* @param array $dags
*/
public function setDags($dags)
{
$this->dags = $dags;
}
/**
* @return array
*/
public function getRecord()
{
return $this->record;
}
/**
* @param array $record
*/
public function setRecord($record)
{
$this->record = $record;
}
/**
* @return string
*/
public function getRecordId()
{
return $this->recordId;
}
/**
* @param string $recordId
*/
public function setRecordId($recordId)
{
$this->recordId = $recordId;
}
/**
* @return string
*/
public function getInstrument()
{
return $this->instrument;
}
/**
* @param string $instrument
*/
public function setInstrument($instrument)
{
$this->instrument = $instrument;
}
/**
* @return string
*/
public function getEventName()
{
return $this->eventName;
}
/**
* @param string $eventName
*/
public function setEventName($eventName)
{
$this->eventName = $eventName;
}
/**
* @return string
*/
public function getPrimaryKey()
{
return $this->primaryKey;
}
/**
* @param string $primaryKey
*/
public function setPrimaryKey($primaryKey)
{
$this->primaryKey = $primaryKey;
}
/**
* @return bool
*/
public function isFieldClobber()
{
return $this->fieldClobber;
}
/**
* @param bool $fieldClobber
*/
public function setFieldClobber($fieldClobber)
{
$this->fieldClobber = $fieldClobber;
}
/**
* @return string
*/
public function getPrefix()
{
return $this->prefix;
}
/**
* @param string $prefix
*/
public function setPrefix($prefix)
{
$this->prefix = $prefix;
}
/**
* @return bool
*/
public function isGenerateSurvey()
{
return $this->generateSurvey;
}
/**
* @param bool $generateSurvey
*/
public function setGenerateSurvey($generateSurvey)
{
$this->generateSurvey = $generateSurvey;
}
/**
* @return string
*/
public function getSurvey()
{
return $this->survey;
}
/**
* @param string $survey
*/
public function setSurvey($survey)
{
$this->survey = $survey;
}
/**
* @return bool
*/
public function isIncrementRecordId()
{
return $this->incrementRecordId;
}
/**
* @param bool $incrementRecordId
*/
public function setIncrementRecordId($incrementRecordId)
{
$this->incrementRecordId = $incrementRecordId;
}
}