diff --git a/DESCRIPTION b/DESCRIPTION index 05eb3710..88b98a4e 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: tune Title: Tidy Tuning Tools -Version: 1.1.2.9022 +Version: 1.2.0 Authors@R: c( person("Max", "Kuhn", , "max@posit.co", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2402-136X")), diff --git a/NEWS.md b/NEWS.md index bc282335..be35ebe8 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# tune (development version) +# tune 1.2.0 ## New Features diff --git a/inst/test_objects.R b/inst/test_objects.R index a5751714..389af042 100644 --- a/inst/test_objects.R +++ b/inst/test_objects.R @@ -171,10 +171,10 @@ knn_results <- knn_set <- two_class_set knn_gp <- - tune:::fit_gp(collect_metrics(knn_results), - knn_set, - "accuracy", - control_bayes() + tune:::fit_gp(dat = collect_metrics(knn_results), + pset = knn_set, + metric = "accuracy", + control = control_bayes() ) saveRDS( diff --git a/inst/test_objects.Rout b/inst/test_objects.Rout index 939b5e40..ee191f13 100644 --- a/inst/test_objects.Rout +++ b/inst/test_objects.Rout @@ -19,20 +19,20 @@ Type 'q()' to quit R. > library(tidymodels) ── Attaching packages ────────────────────────────────────── tidymodels 1.1.1 ── -✔ broom 1.0.5 ✔ recipes 1.0.10.9000 -✔ dials 1.2.0 ✔ rsample 1.2.0.9000 -✔ dplyr 1.1.4 ✔ tibble 3.2.1 -✔ ggplot2 3.4.4 ✔ tidyr 1.3.0 -✔ infer 1.0.5 ✔ tune 1.1.2.9020 -✔ modeldata 1.3.0 ✔ workflows 1.1.4 -✔ parsnip 1.2.0.9000 ✔ workflowsets 1.0.1.9001 -✔ purrr 1.0.2 ✔ yardstick 1.3.0 +✔ broom 1.0.5 ✔ recipes 1.0.10 +✔ dials 1.2.1 ✔ rsample 1.2.0 +✔ dplyr 1.1.4 ✔ tibble 3.2.1 +✔ ggplot2 3.5.0 ✔ tidyr 1.3.1 +✔ infer 1.0.5 ✔ tune 1.2.0 +✔ modeldata 1.3.0 ✔ workflows 1.1.4 +✔ parsnip 1.2.0 ✔ workflowsets 1.0.1.9001 +✔ purrr 1.0.2 ✔ yardstick 1.3.0 ── Conflicts ───────────────────────────────────────── tidymodels_conflicts() ── ✖ purrr::discard() masks scales::discard() ✖ dplyr::filter() masks stats::filter() ✖ dplyr::lag() masks stats::lag() ✖ recipes::step() masks stats::step() -• Use tidymodels_prefer() to resolve common conflicts. +• Learn how to get started at https://www.tidymodels.org/start/ > library(scales) > library(censored) Loading required package: survival @@ -120,7 +120,7 @@ The following object is masked from ‘package:dplyr’: + control = g_ctrl) → A | warning: prediction from rank-deficient fit; consider predict(., rankdeficient="NA") There were issues with some computations A: x1 → B | warning: some 'x' values beyond boundary knots may cause ill-conditioned bases -There were issues with some computations A: x1 There were issues with some computations A: x1 B: x1 There were issues with some computations A: x1 B: x8 There were issues with some computations A: x2 B: x10 There were issues with some computations A: x2 B: x11 There were issues with some computations A: x2 B: x17 There were issues with some computations A: x2 B: x20 +There were issues with some computations A: x1 There were issues with some computations A: x1 B: x4 There were issues with some computations A: x2 B: x10 There were issues with some computations A: x2 B: x11 There were issues with some computations A: x2 B: x16 There were issues with some computations A: x2 B: x20 > > set.seed(8825) > mt_spln_lm_bo <- @@ -131,7 +131,7 @@ There were issues with some computations A: x1 There were issues with some co + control = b_ctrl + ) → A | warning: some 'x' values beyond boundary knots may cause ill-conditioned bases - There were issues with some computations A: x1 There were issues with some computations A: x4 There were issues with some computations A: x6 There were issues with some computations A: x8 There were issues with some computations A: x11 There were issues with some computations A: x13 There were issues with some computations A: x15 There were issues with some computations A: x16 + There were issues with some computations A: x1 There were issues with some computations A: x5 There were issues with some computations A: x6 There were issues with some computations A: x11 There were issues with some computations A: x13 There were issues with some computations A: x14 There were issues with some computations A: x16 There were issues with some computations A: x16 > > # ------------------------------------------------------------------------------ > @@ -144,8 +144,8 @@ There were issues with some computations A: x1 There were issues with some co + control = g_ctrl + ) → A | error: No tidy method for objects of class train.kknn - There were issues with some computations A: x1 There were issues with some computations A: x4 → B | warning: some 'x' values beyond boundary knots may cause ill-conditioned bases -There were issues with some computations A: x4 There were issues with some computations A: x8 B: x3 There were issues with some computations A: x11 B: x3 There were issues with some computations A: x15 B: x5 There were issues with some computations A: x15 B: x6 + There were issues with some computations A: x2 → B | warning: some 'x' values beyond boundary knots may cause ill-conditioned bases +There were issues with some computations A: x2 There were issues with some computations A: x6 B: x3 There were issues with some computations A: x12 B: x3 There were issues with some computations A: x15 B: x6 > > set.seed(8825) > mt_spln_knn_bo <- @@ -154,8 +154,8 @@ There were issues with some computations A: x4 There were issues with some co + iter = 3, + control = b_ctrl) → A | error: No tidy method for objects of class train.kknn - There were issues with some computations A: x3 → B | warning: some 'x' values beyond boundary knots may cause ill-conditioned bases -There were issues with some computations A: x3 There were issues with some computations A: x7 B: x2 There were issues with some computations A: x13 B: x5 There were issues with some computations A: x18 B: x5 There were issues with some computations A: x23 B: x7 There were issues with some computations A: x26 B: x10 There were issues with some computations A: x27 B: x11 There were issues with some computations A: x31 B: x12 There were issues with some computations A: x32 B: x13 There were issues with some computations A: x36 B: x14 There were issues with some computations A: x37 B: x14 There were issues with some computations A: x40 B: x16 + There were issues with some computations A: x1 There were issues with some computations A: x4 → B | warning: some 'x' values beyond boundary knots may cause ill-conditioned bases +There were issues with some computations A: x4 There were issues with some computations A: x8 B: x2 There were issues with some computations A: x14 B: x5 There were issues with some computations A: x20 B: x5 There were issues with some computations A: x25 B: x10 There were issues with some computations A: x26 B: x10 There were issues with some computations A: x31 B: x12 There were issues with some computations A: x36 B: x14 There were issues with some computations A: x37 B: x14 There were issues with some computations A: x40 B: x16 > > set.seed(8825) > mt_spln_knn_bo_sep <- @@ -165,22 +165,22 @@ There were issues with some computations A: x3 There were issues with some co + iter = 3, + control = b_ctrl) → A | error: No tidy method for objects of class train.kknn - There were issues with some computations A: x1 There were issues with some computations A: x5 → B | warning: some 'x' values beyond boundary knots may cause ill-conditioned bases -There were issues with some computations A: x5 There were issues with some computations A: x10 B: x4 There were issues with some computations A: x15 B: x5 There were issues with some computations A: x21 B: x5 ! The Gaussian process model is being fit using 12 features but only has 5 + There were issues with some computations A: x1 There were issues with some computations A: x6 → B | warning: some 'x' values beyond boundary knots may cause ill-conditioned bases +There were issues with some computations A: x6 There were issues with some computations A: x12 B: x5 There were issues with some computations A: x18 B: x5 There were issues with some computations A: x24 B: x8 ! The Gaussian process model is being fit using 12 features but only has 5 data points to do so. This may cause errors or a poor model fit. → C | warning: did not converge in 10 iterations -There were issues with some computations A: x21 B: x5 There were issues with some computations A: x25 B: x10 C: x1 There were issues with some computations A: x27 B: x11 C: x1 ! The Gaussian process model is being fit using 12 features but only has 6 +There were issues with some computations A: x24 B: x8 There were issues with some computations A: x25 B: x10 C: x1 There were issues with some computations A: x26 B: x10 C: x1 There were issues with some computations A: x29 B: x11 C: x1 ! The Gaussian process model is being fit using 12 features but only has 6 data points to do so. This may cause errors or a poor model fit. - There were issues with some computations A: x31 B: x12 C: x1 There were issues with some computations A: x32 B: x13 C: x1 ! The Gaussian process model is being fit using 12 features but only has 7 + There were issues with some computations A: x31 B: x12 C: x1 ! The Gaussian process model is being fit using 12 features but only has 7 data points to do so. This may cause errors or a poor model fit. - There were issues with some computations A: x36 B: x14 C: x1 There were issues with some computations A: x40 B: x15 C: x1 There were issues with some computations A: x40 B: x16 C: x1 + There were issues with some computations A: x36 B: x14 C: x1 There were issues with some computations A: x37 B: x14 C: x1 There were issues with some computations A: x40 B: x16 C: x1 > > # ------------------------------------------------------------------------------ > > set.seed(8825) > mt_knn_grid <- tune_grid(mt_knn, resamples = folds, control = g_ctrl) → A | error: No tidy method for objects of class train.kknn - There were issues with some computations A: x3 There were issues with some computations A: x5 + There were issues with some computations A: x2 There were issues with some computations A: x5 > > set.seed(8825) > mt_knn_bo <- @@ -189,7 +189,7 @@ There were issues with some computations A: x21 B: x5 There were issues wit + iter = 3, + control = b_ctrl) → A | error: No tidy method for objects of class train.kknn - There were issues with some computations A: x1 There were issues with some computations A: x6 There were issues with some computations A: x11 There were issues with some computations A: x16 There were issues with some computations A: x20 There were issues with some computations A: x20 + There were issues with some computations A: x1 There were issues with some computations A: x6 There were issues with some computations A: x11 There were issues with some computations A: x17 There were issues with some computations A: x20 > > # ------------------------------------------------------------------------------ > @@ -250,10 +250,10 @@ There were issues with some computations A: x21 B: x5 There were issues wit > knn_set <- two_class_set > > knn_gp <- -+ tune:::fit_gp(collect_metrics(knn_results), -+ knn_set, -+ "accuracy", -+ control_bayes() ++ tune:::fit_gp(dat = collect_metrics(knn_results), ++ pset = knn_set, ++ metric = "accuracy", ++ control = control_bayes() + ) ! The Gaussian process model is being fit using 12 features but only has 10 data points to do so. This may cause errors or a poor model fit. @@ -408,9 +408,9 @@ Warning message: + control = control_grid(verbose = FALSE, save_pred = TRUE) + ) → A | warning: prediction from rank-deficient fit; consider predict(., rankdeficient="NA") - There were issues with some computations A: x1 There were issues with some computations A: x2 There were issues with some computations A: x3 There were issues with some computations A: x4 → B | warning: some 'x' values beyond boundary knots may cause ill-conditioned bases -There were issues with some computations A: x4 There were issues with some computations A: x4 B: x2 There were issues with some computations A: x4 B: x4 There were issues with some computations A: x4 B: x7 There were issues with some computations A: x4 B: x9 There were issues with some computations A: x4 B: x12 There were issues with some computations A: x4 B: x14 → C | warning: some 'x' values beyond boundary knots may cause ill-conditioned bases, prediction from rank-deficient fit; consider predict(., rankdeficient="NA") -There were issues with some computations A: x4 B: x14 There were issues with some computations A: x4 B: x15 C: x1 There were issues with some computations A: x4 B: x17 C: x2 There were issues with some computations A: x4 B: x19 C: x2 There were issues with some computations A: x4 B: x22 C: x2 There were issues with some computations A: x4 B: x26 C: x2 There were issues with some computations A: x4 B: x30 C: x3 There were issues with some computations A: x4 B: x33 C: x4 There were issues with some computations A: x4 B: x38 C: x4 There were issues with some computations A: x4 B: x42 C: x4 There were issues with some computations A: x4 B: x47 C: x4 There were issues with some computations A: x4 B: x52 C: x4 There were issues with some computations A: x4 B: x57 C: x4 There were issues with some computations A: x4 B: x61 C: x4 There were issues with some computations A: x4 B: x66 C: x4 There were issues with some computations A: x4 B: x71 C: x4 There were issues with some computations A: x4 B: x76 C: x4 There were issues with some computations A: x4 B: x80 C: x4 There were issues with some computations A: x4 B: x85 C: x4 There were issues with some computations A: x4 B: x90 C: x4 There were issues with some computations A: x4 B: x95 C: x4 There were issues with some computations A: x4 B: x99 C: x4 There were issues with some computations A: x4 B: x104 C: x4 There were issues with some computations A: x4 B: x105 C: x4 There were issues with some computations A: x4 B: x107 C: x4 There were issues with some computations A: x4 B: x112 C: x4 There were issues with some computations A: x4 B: x116 C: x4 There were issues with some computations A: x4 B: x121 C: x4 There were issues with some computations A: x4 B: x126 C: x4 There were issues with some computations A: x4 B: x130 C: x4 There were issues with some computations A: x4 B: x135 C: x4 There were issues with some computations A: x4 B: x140 C: x4 There were issues with some computations A: x4 B: x144 C: x4 There were issues with some computations A: x4 B: x149 C: x4 There were issues with some computations A: x4 B: x154 C: x4 There were issues with some computations A: x4 B: x156 C: x6 There were issues with some computations A: x4 B: x161 C: x6 There were issues with some computations A: x4 B: x166 C: x6 There were issues with some computations A: x4 B: x170 C: x6 There were issues with some computations A: x5 B: x172 C: x8 There were issues with some computations A: x6 B: x172 C: x8 There were issues with some computations A: x7 B: x172 C: x8 There were issues with some computations A: x8 B: x173 C: x8 There were issues with some computations A: x8 B: x175 C: x8 There were issues with some computations A: x8 B: x180 C: x8 There were issues with some computations A: x8 B: x184 C: x8 There were issues with some computations A: x8 B: x189 C: x8 There were issues with some computations A: x8 B: x194 C: x8 There were issues with some computations A: x8 B: x199 C: x8 There were issues with some computations A: x8 B: x204 C: x8 There were issues with some computations A: x8 B: x209 C: x8 There were issues with some computations A: x8 B: x211 C: x8 There were issues with some computations A: x8 B: x216 C: x8 There were issues with some computations A: x8 B: x220 C: x8 There were issues with some computations A: x8 B: x225 C: x8 There were issues with some computations A: x8 B: x229 C: x8 There were issues with some computations A: x8 B: x234 C: x8 There were issues with some computations A: x8 B: x239 C: x8 There were issues with some computations A: x8 B: x243 C: x8 There were issues with some computations A: x8 B: x245 C: x8 There were issues with some computations A: x8 B: x250 C: x8 There were issues with some computations A: x8 B: x255 C: x8 There were issues with some computations A: x8 B: x259 C: x8 There were issues with some computations A: x8 B: x264 C: x8 There were issues with some computations A: x8 B: x269 C: x8 There were issues with some computations A: x8 B: x273 C: x8 There were issues with some computations A: x8 B: x278 C: x8 There were issues with some computations A: x8 B: x280 C: x8 + There were issues with some computations A: x1 There were issues with some computations A: x3 There were issues with some computations A: x4 → B | warning: some 'x' values beyond boundary knots may cause ill-conditioned bases +There were issues with some computations A: x4 There were issues with some computations A: x4 B: x3 There were issues with some computations A: x4 B: x9 There were issues with some computations A: x4 B: x14 → C | warning: some 'x' values beyond boundary knots may cause ill-conditioned bases, prediction from rank-deficient fit; consider predict(., rankdeficient="NA") +There were issues with some computations A: x4 B: x14 There were issues with some computations A: x4 B: x18 C: x2 There were issues with some computations A: x4 B: x23 C: x2 There were issues with some computations A: x4 B: x29 C: x2 There were issues with some computations A: x4 B: x32 C: x4 There were issues with some computations A: x4 B: x33 C: x4 There were issues with some computations A: x4 B: x39 C: x4 There were issues with some computations A: x4 B: x44 C: x4 There were issues with some computations A: x4 B: x49 C: x4 There were issues with some computations A: x4 B: x54 C: x4 There were issues with some computations A: x4 B: x60 C: x4 There were issues with some computations A: x4 B: x65 C: x4 There were issues with some computations A: x4 B: x71 C: x4 There were issues with some computations A: x4 B: x76 C: x4 There were issues with some computations A: x4 B: x82 C: x4 There were issues with some computations A: x4 B: x88 C: x4 There were issues with some computations A: x4 B: x93 C: x4 There were issues with some computations A: x4 B: x99 C: x4 There were issues with some computations A: x4 B: x104 C: x4 There were issues with some computations A: x4 B: x105 C: x4 There were issues with some computations A: x4 B: x111 C: x4 There were issues with some computations A: x4 B: x117 C: x4 There were issues with some computations A: x4 B: x122 C: x4 There were issues with some computations A: x4 B: x128 C: x4 There were issues with some computations A: x4 B: x133 C: x4 There were issues with some computations A: x4 B: x139 C: x4 There were issues with some computations A: x4 B: x144 C: x4 There were issues with some computations A: x4 B: x150 C: x4 There were issues with some computations A: x4 B: x154 C: x5 There were issues with some computations A: x4 B: x159 C: x6 There were issues with some computations A: x4 B: x164 C: x6 There were issues with some computations A: x4 B: x170 C: x6 There were issues with some computations A: x5 B: x172 C: x8 There were issues with some computations A: x7 B: x172 C: x8 There were issues with some computations A: x8 B: x172 C: x8 There were issues with some computations A: x8 B: x173 C: x8 There were issues with some computations A: x8 B: x178 C: x8 There were issues with some computations A: x8 B: x184 C: x8 There were issues with some computations A: x8 B: x189 C: x8 There were issues with some computations A: x8 B: x195 C: x8 There were issues with some computations A: x8 B: x200 C: x8 There were issues with some computations A: x8 B: x206 C: x8 There were issues with some computations A: x8 B: x209 C: x8 There were issues with some computations A: x8 B: x215 C: x8 There were issues with some computations A: x8 B: x220 C: x8 There were issues with some computations A: x8 B: x226 C: x8 There were issues with some computations A: x8 B: x229 C: x8 There were issues with some computations A: x8 B: x235 C: x8 There were issues with some computations A: x8 B: x241 C: x8 There were issues with some computations A: x8 B: x245 C: x8 There were issues with some computations A: x8 B: x246 C: x8 There were issues with some computations A: x8 B: x251 C: x8 There were issues with some computations A: x8 B: x257 C: x8 There were issues with some computations A: x8 B: x263 C: x8 There were issues with some computations A: x8 B: x269 C: x8 There were issues with some computations A: x8 B: x274 C: x8 There were issues with some computations A: x8 B: x280 C: x8 There were issues with some computations A: x8 B: x280 C: x8 > > saveRDS( + rcv_results, @@ -471,7 +471,7 @@ There were issues with some computations A: x4 B: x14 There were issues wit > set.seed(2934) > lm_bayes <- tune_bayes(wflow, folds, initial = 4, iter = 3) → A | warning: prediction from rank-deficient fit; consider predict(., rankdeficient="NA") - There were issues with some computations A: x1 There were issues with some computations A: x3 There were issues with some computations A: x5 There were issues with some computations A: x6 + There were issues with some computations A: x2 There were issues with some computations A: x5 There were issues with some computations A: x6 > > saveRDS( + lm_bayes, @@ -531,104 +531,104 @@ There were issues with some computations A: x4 B: x14 There were issues wit ─ Session info ─────────────────────────────────────────────────────────────── setting value version R version 4.3.2 (2023-10-31) - os macOS Sonoma 14.3.1 + os macOS Sonoma 14.4 system aarch64, darwin20 ui X11 language (EN) collate en_US.UTF-8 ctype en_US.UTF-8 tz America/New_York - date 2024-02-28 + date 2024-03-20 pandoc 3.1.11 @ /opt/homebrew/bin/pandoc ─ Packages ─────────────────────────────────────────────────────────────────── - package * version date (UTC) lib source - backports 1.4.1 2021-12-13 [1] CRAN (R 4.3.0) - brio 1.1.4 2023-12-10 [1] CRAN (R 4.3.1) - broom * 1.0.5 2023-06-09 [1] CRAN (R 4.3.0) - censored * 0.3.0 2024-01-31 [1] CRAN (R 4.3.1) - class 7.3-22 2023-05-03 [2] CRAN (R 4.3.2) - cli 3.6.2 2023-12-11 [1] CRAN (R 4.3.1) - codetools 0.2-19 2023-02-01 [2] CRAN (R 4.3.2) - colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.3.0) - data.table 1.14.10 2023-12-08 [1] CRAN (R 4.3.1) - dials * 1.2.0 2023-04-03 [1] CRAN (R 4.3.0) - 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