Add theta2 from Conda

.travis.yml

@@ -9,6 +9,9 @@ install:
   - wget https://storage.googleapis.com/involucro-1149.appspot.com/involucro
   - chmod u+x involucro
 
+after_install:
+  - if [ "$TRAVIS_SECURE_ENV_VARS" = "true" ]; then docker login -e=$DOCKER_EMAIL -u=$DOCKER_USERNAME -p=$DOCKER_PASSWORD quay.io ; fi
+
 script: ./involucro -v travis > /dev/null
 
 notifications:

invfile.lua.md

@@ -876,17 +876,6 @@ repository:
     travis
       .runTask('main:generate_linuxbrew_builder')
 
-If secure variables are available, i.e. this is a trusted build from a branch,
-we log in to Quay.io:
-
-    if ENV.TRAVIS_SECURE_ENV_VARS == "true" then
-      travis.using('docker').withConfig({env = {
-        "DOCKER_EMAIL=" .. ENV.DOCKER_EMAIL,
-        "DOCKER_USERNAME=" .. ENV.DOCKER_USERNAME,
-        "DOCKER_PASSWORD=" .. ENV.DOCKER_PASSWORD
-      }}).run('/bin/sh', '-c', 'docker login -e=$DOCKER_EMAIL -u=$DOCKER_USERNAME -p=$DOCKER_PASSWORD quay.io')
-    end
-
 The branch currently being tested is stored in the environment variable
 `TRAVIS_BRANCH`, but this is also set to `master` when testing a pull request
 directed at `master`.  We therefore have to make sure that this is actually a

packages.tsv

@@ -2,6 +2,7 @@
 linuxbrew	hello	1	test $(/brew/bin/hello -g 'Hello_World') = 'Hello_World'
 linuxbrew	base64	1	test $(echo -n mulled | base64) = 'bXVsbGVk'
 linuxbrew	coreutils	1	test $(/brew/bin/factor 15 | tr ' ' '_') = '15:_3_5'
+linuxbrew	sha2	1	test $(echo -n mulled | /brew/bin/sha2 -256 -q) = '950af197b83c2b315d43232ffb1e11118874fd02e4a4d1d2baf93cea419feb5d'
 alpine	go	1	go version | grep 'go version'
 alpine	irssi	1	irssi -v
 alpine	task	1	/usr/bin/task --version
@@ -15,3 +16,4 @@ conda	cufflinks	2.2.1--py27_1	(cuffmerge --help 2>&1) | grep Options > /dev/null
 conda	tophat	2.1.0--py27_0	(tophat --version 2>&1) > /dev/null
 conda	curl	7.45.0--1	curl --fail icanhazip.com
 conda	bcftools	1.3--0	bcftools --version
+conda	theta2	0.7--py27_0	RunTHetA.py -h