Repositories list

• rjava-interface

  Public
  Built on top of the JRI library. This library includes command queueing logic for thread-safety. Used by J/qtl and J/maanova.

  Java

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Apr 29, 2015Apr 29, 2015

• build-common

  Public
  Some shared ant/ivy/jar files used for my other projects

  1•1•0•0•Updated Apr 29, 2015Apr 29, 2015

• QTLViewer

  Public
  Processing

  •0•3•0•0•Updated May 23, 2013May 23, 2013

• gwt-client-util

  Public
  Some utility classes for browser-side GWT

  Java

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated May 9, 2013May 9, 2013

• phylotosdp

  Public
  Python

  •0•1•0•0•Updated Apr 27, 2012Apr 27, 2012

• bioinf-data

  Public
  java code for reading/writing/manipulating bioinformatics data

  Java

  •0•1•0•0•Updated Jul 11, 2011Jul 11, 2011

• j-maanova

  Public
  A Java swing front-end to the R/maanova package.

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jun 7, 2011Jun 7, 2011

• java-util

  Public
  Java utilities created for projects in the Churchill Group

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 1, 2011Jun 1, 2011

• drake-genetics

  Public
  An educational web application for exploring genetics using the fictional drake genome.

  Java

  •

  GNU General Public License v3.0

  •0•1•4•0•Updated May 5, 2011May 5, 2011

• Cheat_Sheets

  Public
  Cheat sheets and tips for various languages and software.

  0•1•0•0•Updated Mar 15, 2011Mar 15, 2011

• bham

  Public
  A swing based java application for association mapping (experimental)

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Mar 1, 2011Mar 1, 2011

• haplotype-analysis

  Public
  Java code for analysis of haplotype data (experimental)

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Mar 1, 2011Mar 1, 2011

• haplotype-inference

  Public
  Java code to infer haplotype structure (experimental)

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Feb 23, 2011Feb 23, 2011

• emma-scripts

  Public
  R scripts to simplify using the EMMA package with CSV genotypes and MPD phenotypes

  R

  •0•1•0•0•Updated Dec 30, 2010Dec 30, 2010

• pub-array

  Public
  A swing based java application for building web applications from analized microarray data

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Oct 20, 2010Oct 20, 2010

• genetic-util

  Public
  Some utility data structures and utility function for handling SNPs and haplotypes in Java (experimental)

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Oct 20, 2010Oct 20, 2010

• managed-jvm-launcher

  Public
  Java source for launching a new JVM. Used by J/maanova and J/qtl to work around some WebStart limitations

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Oct 18, 2010Oct 18, 2010

• data-plots

  Public
  Some of the 2D data plots code used in J/maanova and J/qtl

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Oct 18, 2010Oct 18, 2010

• hmmSNP

  Public
  HMM software for imputing missing genotypes in SNP datasets

  C

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Aug 16, 2010Aug 16, 2010

• rjava-conf-schema

  Public
  XSD schema module for applications combining R and Java

  GNU General Public License v3.0

  •0•1•0•0•Updated Jul 29, 2010Jul 29, 2010

• maanova

  Public
  A clone of the bioconductor R/maanova repository

  R

  •1•2•0•0•Updated Jun 11, 2010Jun 11, 2010