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Viash: A meta-framework for building reusable workflow modules

GitHub Release Documentation DOI Scala CI License

Viash helps you turn a script (Bash/R/Python/Scala/JavaScript) into a reusable component. By providing some meta-data regarding its functionality, a runner and an engine on which you want to run the software, Viash can help you:

  • Wrap your script in an executable with a CLI and –help functionality,
  • Seamlessly execute your component natively on the host platform or in a Docker container
  • Combine multiple components in a Nextflow pipeline, and
  • Unit-test your component to ensure that it works at all times.

Documentation

The Viash documentation is available online at viash.io.

License

Copyright (C) 2020 Data Intuitive

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.