fix broken indentation #3550
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| name: Scala CI | |
| on: [push] | |
| jobs: | |
| scala-ci: | |
| runs-on: ${{ matrix.config.os }} | |
| if: "!contains(github.event.head_commit.message, 'ci skip')" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { name: 'ubuntu_latest', os: ubuntu-latest } | |
| - { name: 'macos_latest', os: macos-latest } | |
| java: | |
| - { ver: '11', run_nextflow: true, run_coverage: false, nxf_ver: "22.04.5" } | |
| - { ver: '17', run_nextflow: true, run_coverage: true, nxf_ver: latest } | |
| - { ver: '21', run_nextflow: true, run_coverage: false, nxf_ver: latest-edge } | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: viash-io/viash-actions/update-docker-engine@v5 | |
| if: runner.os == 'Linux' | |
| - name: Set up Nextflow | |
| if: ${{ runner.os == 'Linux' && matrix.java.run_nextflow }} | |
| uses: nf-core/setup-nextflow@v1 | |
| with: | |
| version: ${{ matrix.java.nxf_ver }} | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Set up R dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| packages: | | |
| processx | |
| testthat | |
| - name: Set up java & sbt | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: temurin | |
| java-version: ${{ matrix.java.ver }} | |
| - name: Set up sbt specifically on macOS on arm64 if needed | |
| if: ${{ runner.os == 'macOS' && runner.arch == 'ARM64'}} | |
| run: | | |
| if ! command -v sbt &> /dev/null; then | |
| brew install sbt | |
| fi | |
| - name: Set up Scala | |
| run: | | |
| if [[ "${{ matrix.config.os }}" =~ ^macos.*$ ]]; then | |
| brew install scala | |
| else | |
| sudo apt-get update | |
| sudo apt-get install -y scala | |
| fi | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Run tests | |
| run: | | |
| if [[ "${{ matrix.config.name }}" =~ ^ubuntu.*$ ]] && [[ "${{ matrix.java.run_coverage }}" == "true" ]]; then | |
| # only run coverage on main runner | |
| sbt clean coverage test coverageReport | |
| elif [[ "${{ matrix.config.name }}" =~ ^ubuntu.*$ ]] && [[ "${{ matrix.java.run_nextflow }}" == "false" ]]; then | |
| sbt 'testOnly -- -l io.viash.NextflowTest' | |
| elif [[ "${{ matrix.config.os }}" =~ ^macos.*$ ]]; then | |
| # macOS on github actions does not have Docker, so skip those | |
| sbt 'testOnly -- -l io.viash.DockerTest -l io.viash.NextflowTest' | |
| else | |
| sbt test | |
| fi | |
| - name: Upload coverage on success | |
| run: bash <(curl -s https://codecov.io/bash) | |
| - name: Upload check results on fail | |
| if: failure() | |
| uses: actions/upload-artifact@master | |
| with: | |
| name: ${{ matrix.config.name }}_results | |
| path: check |